12/11/2023 0 Comments Qiagen workbenchThe plugin is fully compatible with the Microbial Genomics Pro Suite, CLC Genomics Workbench*, and Biomedical Genomics Workbench* * The plugin requires an up to date version of the CLC Microbial Genomics Module to be installed. Bacteria, virus, parasite, fungi and antibiotic resistance databases.Antibiotic resistance and virulence factors.Visualization including heat maps and principal component analysis (PCA).Bioinformatics, statistical, and comparative analyses.Explore your metagenomic data through a tried and trusted interface and tap into the deep NGS toolbox included in QIAGEN’s bioinformatics solution for microbial genomics. Ease of useĬosmosID installs into CLC Genomics Workbench. GenBook® is derived from private and public databases of assembled genomes and constitutes hundreds of millions of marker sequences representing both coding and non-coding sequences that are shared or uniquely identified across taxonomic or phylogenetic levels. It is able to discriminate pathogens and commensals from their ‘near neighbors’ using statistical and computational methods, with no prior assumptions as to what is present in the sample.ĬosmosID uses raw, unassembled reads as input and matches the sequence against GenBook®, our expertly curated reference database. Deeper insight through expert curated reference dataĬosmosID identifies bacteria, viruses, fungi, and protists, as well as, antibiotic resistance and virulence factors in a whole genome shotgun metagenomic sample. The most popular versions among CLC Main Workbench users are 7.6, 7.5 and 7.0. The actual developer of the software is CLC bio, a QIAGEN Company. The software is categorized as Photo & Graphics Tools. With the use of our curated genome databases and unrivalled sensitivity and specificity (>95%, and >99% respectively) we are unmatched in our ability to detect microorganisms in metagenomic samples. Our website provides a free download of CLC Main Workbench 8.1.2. CosmosID gives you fast, accurate and comprehensive analyses of unassembled next generation sequencing reads. And among others GenBank, Fasta, Swiss-Prot, UniProt and EMBL formats are supported for both im- and export.CosmosID Plugin for Qiagen CLC Detect microbes in metagenomic samples with confidenceĮxplore your metagenomic samples with CosmosID and QIAGEN Bioinformatics. Import data from Vector NTI, CLUSTAL W, or DNA Strider. To name a few, you can export graphics as PNG, PDF, or EPS. This integrated workbench platform enables a modern workflow, where you don't need commercial licenses on all computers in order to work together - simply focus your attention and investments specifically where they're needed, and not only on an overall basis.ĬLC Free Workbench is very versatile when it comes to importing and exporting both data and graphics files. The exchange of data is of course platform independent, so mixed environments with both Mac, Windows, and Linux computers is handled without any problems! Data exchange has never been this easy and convenient. That means data can be exchanged seamlessly between all workbenches, and viewed and handled according to the features available in the current workbench. Download and use is absolutely free of charge.ĬLC Free Workbench is fully integrated with all commercial products from CLC bio. The software package is a community edition, available for Mac OS X, Windows, and Linux. Some of the many bioinformatics analyses: Yet still a wide variety of features available - and - free!ĬLC Free Workbench creates a software environment enabling users to make a large number of bioinformatics analyses, combined with smooth data management, and excellent graphical viewing and output options. LC-MS innovation: Improve analytical accuracy Which microbioreactor modules are best for you Which solid support is right for your oligo synthesis?
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